Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs55866519 | chr3:127644291 | A/G | 0 | 490 | 16.3 | 14.97 | 6.03 | KM Plot |
| THCA | rs55870170 | chr5:96307281 | T/C | 3.52E-6 | 486 | 15.83 | 17.03 | 17.7 | KM Plot |
| THCA | rs55891905 | chr7:120501314 | G/A | 8.29E-7 | 482 | 15.78 | 16.63 | 12.23 | KM Plot |
| THCA | rs55904813 | chr13:24883090 | A/G | 0.000121 | 473 | 15.17 | 18.5 | 17.53 | KM Plot |
| THCA | rs55921115 | chr4:1354852 | G/A | 9.85E-8 | 489 | 16.3 | 14.97 | 6.83 | KM Plot |
| THCA | rs55921647 | chr14:78375539 | C/T | 4.85E-6 | 476 | 15.63 | 16.67 | 14.03 | KM Plot |
| THCA | rs55923113 | chr1:41553594 | C/CAA | 3.32E-12 | 486 | 17.7 | 17.7 | 14.93 | KM Plot |
| THCA | rs55947321 | chr4:88188103 | G/A | 0.000116 | 485 | 16.13 | 15.78 | 12.93 | KM Plot |
| THCA | rs55957581 | chr5:1613726 | A/G | 1.1E-7 | 480 | 15.33 | 16.6 | 15.97 | KM Plot |
| THCA | rs55960262 | chr3:56594388 | C/T | 4.22E-6 | 483 | 16.97 | 12.47 | 8.47 | KM Plot |
| THCA | rs55968289 | chr3:139260285 | C/T | 4.39E-6 | 490 | 15.9 | 16.87 | 14.53 | KM Plot |
| THCA | rs55972058 | chr2:28995523 | A/C | 0.000113 | 490 | 15.32 | 18.03 | 14.98 | KM Plot |
| THCA | rs55977095 | chr13:24890602 | A/G | 0.000129 | 478 | 15.2 | 17.8 | 17.08 | KM Plot |
| THCA | rs55977521 | chr1:224378232 | G/T | 7.69E-5 | 489 | 16.67 | 14.63 | 13.8 | KM Plot |
| THCA | rs55987999 | chr3:139268696 | C/T | 4.78E-6 | 487 | 15.9 | 16.87 | 14.53 | KM Plot |